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mvaniersel


Posts: 4
Registered:
August 2009
SBML-Qual: defaultFunctionTerm 08 Jun '12 08:05 Go to previous message

SBML-Qual has a method for defining the default result of a transition called defaultTerm. See for example this snippet:

 <listOfFunctionTerms>
  <functionTerm resultLevel="1">
   <math> < !−− A >= 1−−>
    <apply>
     <geq/>
      <c i>A</ c i>
      <c i>theta B A</ c i>
    </apply>
   </math>
  </functionTerm>
  <defaultTerm resultLevel="0" />
 </listOfFunctionTerms>


See also the current specs: https://sbml.svn.sourceforge.net/svnroot/sbml/trunk/specifications/sbml-level-3/version-1/qual/spec/qual-spec.pdf

defaultTerm is not currently implemented in JSBML. The problem is that this is a sub-element of a ListOf<FunctionTerm>, which we can not add additional members to. Or can we?

      

SubjectPosterDate
Read Message   SBML-Qual: defaultFunctionTerm  mvaniersel08 Jun '12 08:05
Read Message   Re: SBML-Qual: defaultFunctionTerm Andreas Dräger10 Jun '12 09:21
Read Message   Re: [sbml-qual] SBML-Qual: defaultFunctionTerm Nicolas Le Novere11 Jun '12 08:29
Read Message   Re: [sbml-qual] SBML-Qual: defaultFunctionTerm Martijn van Iersel11 Jun '12 09:26
Read Message   Re: SBML-Qual: defaultFunctionTerm rodrigue11 Jun '12 01:52
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