Forums

F.A.Q. F.A.Q.    Register Register    Login Login    Home Home
Search Search
SBML Discussions » jsbml-development » Bug in SBMLWriter
Show: Today's Posts  :: Message Navigator
| Subscribe to topic 
Return to the default flat view Create a new topic Submit Reply
AuthorTopic
Andreas Dräger


Posts: 273
Registered:
June 2006
Bug in SBMLWriter 08 May '12 05:57 Go to previous message

|Hi all,

It seems the SBML writer does currently write invalid SBML code when
making use of the ability of SBML Level 3 to associate plain numbers
with units:

<cn type="integer" sbml:units="dimensionless"> 1 </cn>

The above code is only valid if the namespace declaration of the math
element also defines

xmlns:sbml="http://www.sbml.org/sbml/level3/version1/core"

Currently, it does only declare the regular MathML namesapce. As a
result, JSBML is currently unable to parse models that itself wrote into
a file before. Where can we fix this problem?

Cheers
Andreas
|

--
Dr. Andreas Dräger
University of Tuebingen
Center for Bioinformatics Tuebingen (ZBIT)
Sand 1
72076 Tübingen
Germany

Phone: +49-7071-29-78982
Fax: +49-7071-29-5091

____________________________________________________________
To manage your jsbml-development list subscription, visit
https://utils.its.caltech.edu/mailman/listinfo/jsbml-development

For a web interface to the jsbml-development mailing list, visit
http://sbml.org/Forums/

For questions or feedback about the jsbml-development list,
contact sbml-team@caltech.edu

      

SubjectPosterDate
Read Message   Bug in SBMLWriter  Andreas Dräger08 May '12 05:57
Read Message   Re: Bug in SBMLWriter rodrigue08 May '12 06:17
Read Message   Re: Bug in SBMLWriter Andreas Dräger08 May '12 06:20
Read Message   Re: Bug in SBMLWriter rodrigue08 May '12 06:30
Read Message   Re: Bug in SBMLWriter rodrigue08 May '12 06:43
Read Message   Re: Bug in SBMLWriter rodrigue08 May '12 07:10
Read Message   Re: Bug in SBMLWriter Andreas Dräger09 May '12 11:42
Read Message   Re: Bug in SBMLWriter rodrigue10 May '12 04:49
Read Message   Re: Bug in SBMLWriter rodrigue10 May '12 04:57
Read Message   Re: Bug in SBMLWriter rodrigue10 May '12 05:38
Read Message   Re: Bug in SBMLWriter Andreas Dräger10 May '12 05:50
Read Message   Re: Bug in SBMLWriter Andreas Dräger10 May '12 04:59
Previous Topic:Re: [sbml-render] Ids and names on elements
Next Topic:jsbml-svn commit list added
Go to forum:
-=] Back to Top [=-

Powered by FUDforum. (Copyright Advanced Internet Designs Inc.)

Please use our issue tracking system for any questions or suggestions about this website.